Selected Publications:
Since at ASU
2021

miRNA-Based Regulation of Alternative RNA Splicing in Metazoans
Int. J. Mol. Sci. (2021), 22, 11618. https://doi.org/10.3390/ijms222111618
2020

Transcriptome changes during the initiation and progression of Duchenne Muscular Dystrophy in C. elegans
Human Molecular Genetics (2020) Jun 27;29(10):1607-1623. doi: 10.1093/hmg/ddaa055.
2019

The C. elegans 3’-UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3’-UTR biology, and miRNA targeting
Genome Research (2019) Dec;29(12):2104-2116. doi: 10.1101/gr.254839.119. Epub 2019 Nov 19.

miRNA Profiling for Early Detection and Treatment of Duchenne Muscular Dystrophy.
Int. J. Mol. Sci. 2019, 20(18), 4638

ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities
GENETICS (2017) June 1, vol. 206 no. 2 757-774
2017

Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues
GENETICS (2017) https://doi.org/10.1534/genetics.116.196774

Evolutionary patterns of metazoan microRNAs reveal targeting principles in the let-7 and miR-10 families
Genome Res. (2017) 27: 53-63
2016

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis
BMC Genomics (2016) 17:339

Potential Diagnostic and Prognostic Biomarkers of Epigenetic Drift within the Cardiovascular Compartment
BioMed Research International (2016) doi: 10.1155/2016/2465763
2015

A human 3′UTR clone collection to study post-transcriptional gene regulation
BMC Genomics (2015) Dec 9;16:1036

miRNAs as Biomarkers in Chronic Myelogenous Leukemia
Drug Dev Res (2015) Aug 18. doi: 10.1002/ddr.21266

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
BMC Biology (2015) 13:4 doi:10.1186/s12915-015-0116-6

Detection of miRNA Targets in High-Throughput Using the 3'LIFE Assay
J Vis Exp (2015) May 25;(99):e52647. doi: 10.3791/52647
2014

3′LIFE: a functional assay to detect miRNA targets in high-throughput
Nucleic Acids Res (2014) doi: 10.1093/nar/gku626
Before arrival at ASU
2010

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Science 2010 Dec 24;330(6012):1775-87

Role of the HCF-1 Basic Region in Sustaining Cell Proliferation.
PLoS ONE 2010; Feb 2;5(2):e9020

The Landscape of C. elegans 3 'UTRs.
Science June 3, 2010 DOI: 10.1126/science.1191244.
2009

Unlocking the secrets of the genomes.
Nature 2009; Jun 18;459 (7249):927-30.
2007

UTRome.org: a platform for 3'UTR biology in C. elegans.
Nucleic Acids Res 008 Jan; 36:D57-62. Epub 2007 Nov 5.
2002

The Generic Genome Browser: A Building Block for a Model Organism System Database.
Genome Res Oct 2002; 12: 1599–1610 (cited 436 times)
2001

Perl and ACEDB
Chapter 13 p. 357-383 Paperback - 405 pages (May 2001) Hungry Minds, Inc; ISBN: 0764547836.

RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans.
Current Biology 10: 1619-1622 2001.

WormBase: network access to the genome and biology of Caenorhabditis elegans.
Nucleic Acids Res 001 Jan 1;29(1):82-6.