Mangonelab - Publications

Selected Publications:

Since at ASU

2024

Murari E, Meadows D, Cuda N, and Mangone M (2024)
A comprehensive analysis of 3′UTRs in Caenorhabditis elegans
Nucleic Acids Research, gkae543, https://doi.org/10.1093/nar/gkae543

2023

Schorr AL, Felix Mejia A, Miranda MY, and Mangone M (2023)
An updated C. elegans nuclear body muscle transcriptome for studies in muscle formation and function.
Skelet Muscle 2023 Mar 2;13(1):4. doi: 10.1186/s13395-023-00314-2.

2022

Zhang Q, Hrach H, Mangone M and Reiner DJ (2022)
Identifying the Caenorhabditis elegans vulval transcriptome
G3 Genes|Genomes|Genetics, (2022)Volume 12, Issue 6, June 2022, jkac091

2021

Schorr AL and Mangone M (2021)
miRNA-Based Regulation of Alternative RNA Splicing in Metazoans
Int. J. Mol. Sci. (2021), 22, 11618. https://doi.org/10.3390/ijms222111618

2020

Hrach HC, O’Brien S, Steber HS, Newbern J, Rawls A and Mangone M (2020)
Transcriptome changes during the initiation and progression of Duchenne Muscular Dystrophy in C. elegans
Human Molecular Genetics (2020) Jun 27;29(10):1607-1623. doi: 10.1093/hmg/ddaa055.

2019

Steber SH, Gallante C, O’Brien S, Chiu P.-L and Mangone M (2019)
The C. elegans 3’-UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3’-UTR biology, and miRNA targeting
Genome Research (2019) Dec;29(12):2104-2116. doi: 10.1101/gr.254839.119. Epub 2019 Nov 19.

Hrach HC and Mangone M (2019)
miRNA Profiling for Early Detection and Treatment of Duchenne Muscular Dystrophy.
Int. J. Mol. Sci. 2019, 20(18), 4638

Kotagama K, Schorr AL, Steber HS and Mangone M (2019)
ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities
GENETICS (2017) June 1, vol. 206 no. 2 757-774

2017

Blazie S, Geissel H, Wilky H, Joshi R, Newbern J and Mangone M (2017)
Alternative polyadenylation directs tissue specific miRNA targeting in Caenorhabditis elegans somatic tissues
GENETICS (2017) https://doi.org/10.1534/genetics.116.196774

Wolter JM, Le HH, Linse A, Godlove VA, Nguyen TD, Kotagama K, Lynch A, Rawls A and Mangone M (2017)
Evolutionary patterns of metazoan microRNAs reveal targeting principles in the let-7 and miR-10 families
Genome Res. (2017) 27: 53-63

2016

Hutchins ED, Eckalbar WL, Wolter JM, Mangone M and Kusumi K (2016)
Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis
BMC Genomics (2016) 17:339

Wallace R, Twomey LC, Custard MA, Monya N, Cummins PM, Mangone M and Murphy RP (2016)
Potential Diagnostic and Prognostic Biomarkers of Epigenetic Drift within the Cardiovascular Compartment
BioMed Research International (2016) doi: 10.1155/2016/2465763

2015

Kotagama K, Babb C, Wolter JM, Murphy RP, Mangone M (2015)
A human 3′UTR clone collection to study post-transcriptional gene regulation
BMC Genomics (2015) Dec 9;16:1036

Kotagama K, Chang Y, and Mangone M (2015)
miRNAs as Biomarkers in Chronic Myelogenous Leukemia
Drug Dev Res (2015) Aug 18. doi: 10.1002/ddr.21266

Blazie S, Babb C, Wilky H, Rawls A, Park J and Mangone M (2015)
Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
BMC Biology (2015) 13:4 doi:10.1186/s12915-015-0116-6

Wolter JM, Kotagama K, Babb C and Mangone M (2015)
Detection of miRNA Targets in High-Throughput Using the 3'LIFE Assay
J Vis Exp (2015) May 25;(99):e52647. doi: 10.3791/52647

2014

Wolter JM, Kotagama K, Pierre-Bez A, Firago M and Mangone M (2014)
3′LIFE: a functional assay to detect miRNA targets in high-throughput
Nucleic Acids Res (2014) doi: 10.1093/nar/gku626

Before arrival at ASU

2010

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X; modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Science 2010 Dec 24;330(6012):1775-87

Mangone M, Myers MP, Herr W (2010)
Role of the HCF-1 Basic Region in Sustaining Cell Proliferation.
PLoS ONE 2010; Feb 2;5(2):e9020

Mangone M, Prasad Manoharan A, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak S, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins T, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK (2010)
The Landscape of C. elegans 3 'UTRs.
Science June 3, 2010 DOI: 10.1126/science.1191244.

2009

The modENCODE CONSORTIUM.
Unlocking the secrets of the genomes.
Nature 2009; Jun 18;459 (7249):927-30.

2007

Mangone M, Macmenamin P, Zegar C, Piano F, Gunsalus KC (2007)
UTRome.org: a platform for 3'UTR biology in C. elegans.
Nucleic Acids Res 008 Jan; 36:D57-62. Epub 2007 Nov 5.

2002

Stein LD, Mangone M, Day A, Harris T, Arva A, Shu SQ, Lewis S and Mungall C (2002)
The Generic Genome Browser: A Building Block for a Model Organism System Database.
Genome Res Oct 2002; 12: 1599–1610 (cited 436 times)

2001

Mangone M and Stein LD (2001) Applied Perl (Williams).
Perl and ACEDB
Chapter 13 p. 357-383 Paperback - 405 pages (May 2001) Hungry Minds, Inc; ISBN: 0764547836.

Piano F, Schetter AJ, Mangone M, Stein LD, Kemphues KJ (2001)
RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans.
Current Biology 10: 1619-1622 2001.

Stein L, Mangone M, Schwarz E, Durbin R, Thierry-Mieg J, Spieth J, Sternberg P (2001)
WormBase: network access to the genome and biology of Caenorhabditis elegans.
Nucleic Acids Res 001 Jan 1;29(1):82-6.